Workshop program

 

“Storage and Annotation of Reaction Kinetics Data”

 

 

 

 

Monday May 21st

 

9:00                             Welcome and Introduction

Andreas Reuter, Isabel Rojas

 

9:15                             Keynote speaker

Pedro Mendes

Integrated Data Management for Kinetic Modelling and Experimental Results

 

Session: Data generation

9:45                             Jildau Bouwman

An approach to acquire quantitative data for systems biology

 

10:20                           Coffee break

 

10:50                           Jeroen Hugenholtz

Comparative Systems Biology: Lactic Acid Bacteria

11:25                           Manuel Canovas

                                   Role of wet experiment design in data generation: From in vivo to in silico and back

 

12:00                           Lunch

 

Session: Data storage and integration

13:30                           Olga Kel-Margoulis

Integrating pathway data for systems pathology

14:05                           Dietmar Schomburg

Requirements for functional databases in the era of systems biology, the BRENDA example

 

14:40                           Coffee break

 

15:10                           Jacky Snoep

Data and model integration using JWS Online

15:45                           Isabel Rojas

Storing and annotating kinetic data

 

16:30                           Poster session

 

19:00                           Workshop dinner

 

 

Tuesday May 22nd

 

Session: Data annotation

9:00                             Nicolas Le Novere

Controlled annotation of kinetics models

9:35                             Kirill Degtyarenko

                                   "Good annotation practice" for the chemical data in biology

 

10:10                           Coffee break

 

10:40                           Carsten Kettner

Good Publication Practice as a Prerequisite for Comparable Enzyme Data?

 

Poster talks

11:15 Stephan Weise

META-ALL: A system for managing metabolic pathway information

11:30 Matthias Stein

Comparing Molecular Interaction Fields in Structure-Based Systems Biology

 

12:00                           Lunch

 

Session: Data usage

13:30                           Ursula Kummer

Usage of Reaction Kinetics Data Stored in Databases - a Modeler's Point of View

14:05                           Wolfram Liebermeister

Integration of enzyme kinetic data from various sources

 

14:40                           Coffee break

 

15:10                           Akira Funahashi

                                   Integration of CellDesigner and SABIO-RK

 

Poster talks

15:45 Neil Swainston

Development of an extensible system for the data capture and storage of enzyme kinetics experimental data

16:00 Detlev Bannasch

Integrated database for HepatoSys - an overview

                      

 

16:30                           General discussion

 

 

Wednesday May 23rd

 

Session: Software demos

9:00 Carel van Gend, Jacky Snoep

JWS Online

 

9:45 Klaus Mauch

Insilico Discovery: Integration and Analysis of "Omics" Data through Genome Based Metabolic Networks

 

10:30 Coffee break

 

11:00 Isabel Rojas, Andreas Weidemann

SABIO-RK /Sycamore

 

12:00                           Lunch