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Monday, June 15, 2009
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09:00-09:15
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Welcome (Andreas Reuter) |
09:15-10:15
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Introduction (Wolfgang Mueller, Isabel Rojas) |
10:15-10:45
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Hanan Messiha (University of Manchester, UK) |
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"The KineticsWizard: a Data Capture Tool for the Submission of Enzyme Kinetics Data" |
10:45-11:15
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Break |
11:15-11:45
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Matthias König (Humboldt-University Berlin, Germany) |
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"Towards a Kinetic Model of the Hepatocyte Core Metabolism" |
11:45-13:00
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Tutorial: Data input in SABIO-RK |
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(Andreas Weidemann, Martin Golebiewski, Heidrun Sauer-Danzwith) |
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Manual data input |
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Automatic data submission |
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Data transfer |
13:00-14:00
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Lunch |
14:00-16:00
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Tutorial: Data curation and annotation in SABIO-RK |
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(Renate Kania, Martin Golebiewski, Henriette Engelken) |
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Input interface |
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Ontologies, controlled vocabularies, annotations |
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Tools for data integration and curation |
16:00-16:30
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Break |
16:30-16:50
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Paula de Matos (European Bioinformatics Institute, UK) |
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"A balanced view on the world - a biochemical reactions database. (http://www.ebi.ac.uk/rhea/)" |
16:50-17:10
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Ismael Navas-Delgado (University of Malaga, Spain) |
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"SBMM Assistant: A tool for Accessing an Ontology-Based Mediator" |
17:10-17:30
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Ulf Liebal (University of Rostock, Germany) |
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"Models of the general stress response using the SBToolbox2 - Can SYCAMORE substitute?" |
19:00
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Dinner in the Old Town of Heidelberg |
Tuesday, June 16, 2009
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09:00-09:30
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Ursula Kummer (University of Heidelberg, Germany) |
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"Sycamore - a data base assisted modeling tool (interacting with SABIO-RK)" |
09:30-10:00
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Akira Funahashi (Keio University, Japan) |
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"Integration of CellDesigner and SABIO-RK" |
10:00-10:30
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Peter Li (University of Manchester, UK) |
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"Systematic integration of experimental data and models in systems biology" |
10:30-11:00
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Break |
11:00-13:00
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Tutorial: Data access in SABIO-RK |
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(Ulrike Wittig, Martin Golebiewski, Saqib Mir) |
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User interface |
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SBML export |
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Web services |
13:00-14:00
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Lunch |
14:00-15:00
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Future directions/Discussion (Wolfgang Mueller, Isabel Rojas) |