|
Final Program
[PDF]
|
|
Thursday, April 16, 2009
| |
15:00-22:00
|
Arrival/Registration |
|
18:00-18:15
|
Welcome |
|
|
Renate Kania |
|
18:15-19:15
|
Plenary talk |
|
|
(Chair: Petra Fey) |
|
|
Janet Thornton - The EMBO Lecture "Data Curation in Biology - Past, Present and Future" |
|
19:15-19:45
|
Society Inauguration |
|
|
Pascale Gaudet |
|
19:45-22:00
|
Reception |
Friday, April 17, 2009
| |
08:30-09:30
|
Plenary talk |
|
|
(Chair: Winston Hide) |
|
|
Philip Bourne "Changes in Scholarly Communication and the Potential Impact on Biocuration" |
|
09:30-11:00
|
Session: Literature Collection and Curation |
|
|
(Chairs: Simon Twigger, Sinead Boyce, Mary-Ann Tuli) |
|
|
Invited Speaker: Amos Bairoch "Future of annotation/biocuration"
Ulrike Wittig "SABIO-RK: Curated Kinetic Data of Biochemical Reactions"
Conrad Plake "Ontology-based Assisted Curation of Biomedical Data"
Jeff Christiansen "Images, Copyright and Biological Databases"
Kimberly Van Auken "Using Textpresso for Information Retrieval, Fact Extraction and Database Entry"
|
|
11:00-11:30
|
Break |
|
11:30-13:00
|
Session: Genome Sequence Annotation and Comparative Genomics |
|
|
(Chairs: Jennifer Harrow, Linda Hannick) |
|
|
Daniel Haft "BrainGrab: Capturing curator expertise as reusable annotation rules"
Claudine Medigue "Microscope, a platform for microbial genome annotation and comparative genomics"
Alan Kuo "Challenges in whole-genome annotation of pyrosequenced fungal genomes"
Mark Thomas "Manual annotation of the mouse genome: HAVANA and EUCOMM"
Jon Teague "Cosmic, Curating Somatic Mutations in Human Cancer"
|
|
13:00-14:00
|
Lunch |
|
14:00-18:00
|
Concurrent Workshops/Tutorials |
|
18:00-19:00
|
Dinner |
|
19:00-22:00
|
Poster session 1 (even numbered posters will be presented) |
Saturday, April 18, 2009
| |
08:30-09:30
|
Plenary talk |
|
|
(Chair: Jennifer Harrow) |
|
|
Jim Ostell "Digital BioCuration: A Question of Balance" |
|
09:30-11:00
|
Session: Standards, Controlled Vocabularies and Ontologies |
|
|
(Chairs: Owen White, David Hill) |
|
|
Invited Speaker: Dawn Field "The Genomic Standards Consortium: towards richer descriptions of the public collection of genomes and metagenomes"
Susanna-Assunta Sansone "Bioinvestigation index - standards and infrastructure"
Thomas Wächter "An ontology generation plugin for OBO-Edit"
Simon Twigger "1.5 Billion data points trapped in international data repository - daring rescue planned!"
|
|
11:00-11:30
|
Break |
|
11:30-13:00
|
Session: Functional Genomics Data Curation |
|
|
(Chairs: David Hill, Sue Rhee) |
|
|
Invited Speaker: Michael Cusick "Literature curation of protein interactions"
Andrew Winter "The BioGRID database of literature-curated protein and genetic interactions"
Pascale Gaudet "The reference genome project"
Patrick May "Filling the gaps in genome scale metabolic networks - an application to Chlamydomonas reinhardtii"
Shoshi Kikuchi "Transcription factor genes evolved in a different manner in animals and plants"
|
|
13:00-14:00
|
Lunch |
|
14:00-18:00
|
Free afternoon to explore Berlin |
|
18:00-19:00
|
Dinner |
|
19:00-22:00
|
Poster session 2 (odd numbered posters will be presented) |
Sunday, April 19, 2009
| |
08:30-10:00
|
Session: Supporting and Encouraging Community Curation and Deposition |
|
|
(Chairs: Matt Day, Marc Gillespie, Winston Hide, Oliver Hofmann) |
|
|
Mary Schaeffer "The maize gene review - a new on-line journal promotes community curation of phenotypes"
Tanya Berardini "A Report from the Journal-MOD Collaboration Front: TAIR and Plant Physiology"
Jennifer Williams "Increasing Access to to Bioinformatics Resources"
Lauren Brinkac "Expert Assertions through community Annotation Jamborees"
|
|
10:00-10:15
|
Break |
|
10:15-11:45
|
Gully Burns "Curating experiments and resulting data for disease foundation"
Igor Grigoriev "A Successful Scalable Model for Community Genome Annotation"
Invited Speaker: Chris Evelo "Community curation on WikiPathways; how we assist knowledge collection"
Invited Speaker: Chris Thorpe "All these things not entirely made by me"
|
|
11:45-12:00
|
Round table discussion |
|
12:00-12:30
|
Closing Remarks |
|
13:00-14:00
|
Lunch
|
