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Molecular and Cellular Modeling
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Software |
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- RAMD scripts and example files can be downloaded here as a tar file
The Random Acceleration
Molecular Dynamics (RAMD) method can be used to carried out molecular
dynamics simulations with an additional randomly oriented force applied
to the center of mass of one molecule in the system. It can be used, for
example, to identify egress routes for a ligand from a buried protein
binding site. For more information on RAMD, see the RAMD webpage
MCM software manager
, December 2009
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